RUN cp -R /usr/local/lib/R/site-library/shiny/examples/* /home/rstudio/ShinyApps/ RUN cp -R /usr/local/lib/R/site-library/shiny/examples/* /srv/shiny-server/ RUN Rscript -e "install.packages(c('shiny', 'rmarkdown', 'rsconnect'), repos = '')" RUN wget -no-verbose -O "version.txt" & \ & rm -rf /tmp/downloaded_packages/ /tmp/*.rds # (because -deps TRUE can fail when packages are added/removed from CRAN) RUN Rscript -e "install.packages(c('liftr', 'packrat'), repos = '')" # Copy command line interface and report templates needed # & ln -s /cgc-uploader/bin/cgc-uploader.sh /usr/local/bin/cgc-uploader.sh # & ln -s /sbg-uploader/bin/sbg-uploader.sh /usr/local/bin/sbg-uploader.sh & ln -s /rabix-cli-1.0.5/rabix /usr/local/bin/rabix RUN Rscript -e "install.packages('BiocManager') \ĭevtools::install_github('sbg/sevenbridges-r', repos = BiocManager::repositories(), build_vignettes = FALSE, dependencies = TRUE)"
R STUDIO SHINY INSTALL
# Install from GitHub instead of Bioconductor for the latest version & add-apt-repository "deb $(lsb_release -cs) stable" \ & apt-get install -y apt-transport-https ca-certificates gnupg2 software-properties-common \ RUN apt-get update & apt-get install -y \ Here is the current content of Dockerfile: fl <- system.file("docker/sevenbridges/", "Dockerfile", package = "sevenbridges")Ĭat(readLines(fl), sep = "\n") FROM rocker/tidyverse The Dockerfile is included with the package in inst/docker folder.
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